• Bayesian Analysis of Gene Expression Levels (BAGEL): a program for the statistical analysis of spotted microarray data.
  
  • Download the archive for
    • Macintosh OS X
    • Macintosh OS 9
    • Windows
    • Ryan Weddle's compile for Linux
      
  • Download the BAGEL Tutorial
    
  • View some papers that have used the BAGEL software.
    
    
• Pathway Processor: A program that tests for overrepresentation of differentially expressed genes within known pathways of S. cerevisiae or B. subtilis.
  • Available in
    • Virtual-machine Java.
      
      
• SeqPop: A program for computing population genetics statistics on sequence data, including Pn, Theta, Pi(i,j), Kst(*), Fst(*), and their Monte Carlo significance for population subdivision.
  
  • Download the archive for
    • Macintosh OS X
    • Macintosh OS 9

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