• Landry, C.R., J.P. Townsend, D.L. Hartl and D. Cavalieri, 2006. Ecological and evolutionary genomics of Saccharomyces cerevisiae. Molecular Ecology 15: 575-591.
  
  • M2-8 expression level results
  • M2-8 ratio data
    
    
• Kasuga, T., J.P. Townsend, C. Tian, L.B. Gilbert, G. Mannhaupt, J.W. Taylor, and L.N. Glass, 2005. Long-oligomer microarray profiling in Neurospora crassa reveals the transcriptional program underlying biochemical and physiological events of conidial germination. Nucleic Acids Research 33(20): 6469-6485.
  
  • Expression level results
    
    
• Townsend, J.P., 2004. Resolution of large and small differences in gene expression using models for the Bayesian analysis of gene expression levels and spotted DNA microarrays. BMC Bioinformatics 5: 54. Simulated ratios:
  
  • Normal over normal, constrained CV
    
  • Normal over normal, constrained variance
    
  • Lognormal over lognormal, constrained CV
    
  • Lognormal over lognormal ratios, constrained variance
    
  • Gamma distribution
    
  • Truncated Cauchy distribution
    
    
• Townsend, J.P., D. Cavalieri, and D.L. Hartl. 2003. Population genetic variation in genome-wide gene expression in wine yeasts. Molecular Biology and Evolution 20 (6): 955-963.
  
  • Montalcino strains: data and results
    
    
• Townsend, J.P., and D.L. Hartl. 2002. Bayesian analysis of gene expression levels: statistical quantification of relative mRNA level across multiple strains or treatments. Genome Biology 3 (12): research0071.1-0071.16.
  
  • Ethanol shock results
    
  • Swi/Snf mutants in minimal medium results
    
  • Swi/Snf mutants in rich medium results
    
  • Zinc regulation results
    
    
• Cavalieri, D., J.P. Townsend, and D.L. Hartl, 2000. Manifold anomalies in gene expression in a vineyard isolate of Saccharomyces cerevisiae revealed by DNA microarray analysis. Proceedings of the National Academy of Sciences 97: 12369-12374.
  
  • Filigreed vs. filigreed data
    
  • Filigreed vs. smooth data

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