Assignments for Friday's class:

  • Read through takehome exam number 1, ask question on Friday, due on Monday.


Discussion:

Timeline of the Universe, Snowball Earth (why slides A and B)

Evolution, different meanings, fact vs theory, natural selection -- what else


 

Natural Selection and Evolution

When does "evolution" occur? An algorithmic approach.

"Darwin's Dangerous Idea" by Daniel C. Dennett, Chapter on Evolution as algorithm is a reading assignment for Monday, Sept. 13. [available through WebCT]

What is needed for evolution to occur?

(Note, this is different from stating that this is all that occurs in evolution)

  • Offspring not identical to parents
  • More offsring than necessary
  • Competition for resources, mates => survival of the fittest.

What processes in biological evolution go beyond inheritance with variation and selection? (We'll discuss many of the following later in the semester.)

  • Horizontal gene transfer and recombination
  • Polyploidization (botany, vertebrate evolution) see here
  • Fusion and cooperation of organisms (Kefir, lichen, also the eukaryotic cell)
  • Targeted mutations (?), genetic memory (?) (see Foster's and Hall's reviews on directed/adaptive mutations; see here for a counterpoint)
  • Random genetic drift
  • Gratuitous complexity
  • Selfish genes (who/what is the subject of evolution??)
  • Parasitism, altruism, Morons, gene transfer agents

Review: ATP synthases

link

The F1-ATPase as three cylinder three-cycle engine

figure

Nojiet al (1997) Direct observation of the rotation of F1-ATPase. Nature, 386, 299 - 302 tehered the headgroup of an ATPase to a coverslip and linked the gamma subumit to an actin filament that was flurescently labeled:

ATPase tethered

The resulting movie after ATP addition is here .

 

Slides class 4 Tree / Net of life

Slides on inteins